關於「hisat2 pipeline」標籤，搜尋引擎有相關的訊息討論：

HISAT2 graph-based alignment of next generation sequencing ...。

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as ...： 。

Manual | HISAT2。

HISAT2 is a fast and sensitive alignment program for mapping ... also called the “Phred+33” encoding, which is used by the very latest Illumina pipelines.： 。

[PDF] A Simplest Bioinformatics Pipeline for Whole Transcriptome ...。

2019年11月9日 · FastQC,. Bowtie2/HISAT2, samtools, cufflinks along with imperative files containing the human genome reference sequence (hg38 from UCSC human ...： 。

SPEAQeasy: a scalable pipeline for expression analysis and ... - NCBI。

2021年5月1日 · Input RNA-seq reads are aligned using HISAT2 [37] to a reference genome and pseudo-aligned to a reference transcriptome using kallisto [38] ...： tw | tw。

Cloud accelerated alignment and assembly of full-length single-cell ...。

2019年12月30日 · Overview of the Falco framework pipelines. a Alignment-only pipeline. ... The alignment tool - STAR or HISAT2 - is then executed using ...。

CircRNAwrap – a flexible pipeline for circRNA ... - FEBS Press。

2019年5月4日 · Share on. Email; Facebook; Twitter; Linked In; Reddit; Wechat ... Linear reads were analyzed with the hisat2-stringtie method [37].。

Factorial study of the RNA-seq computational workflow identifies ...。

By exploring the RNA-seq pipeline using this systemic approach, ... shares the reads between a gene and its pseudogenes, while HISAT2 and STAR do not.。

CIRCexplorer pipelines for circRNA annotation and quantification ...。

2021年2月12日 · The input files contain HISAT2 genome index file (hg38), the GENCODE splice site annotation file (hg38_gencode_sp.txt) and ribo− RNA-seq ...。

Systems Medicine: Integrative, Qualitative and Computational ...。

A bioinformatics pipeline for whole exome sequencing: Overview of the processing ... Transcript-level expression analysis of RNA-seq experiments with HISAT, ...。

(PDF) SPEAQeasy: a Scalable Pipeline for Expression Analysis and ...。

2020年12月13日 · PDF | RNA sequencing (RNA-seq) is a common and widespread biological assay, and an increasing amount of data is generated with it.